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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
58
total RNA-seq
27
ChIP-seq
6
snATAC-seq
5
STARR-seq
2
ATAC-seq
2
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
164
Transcription
27
DNA binding
8
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
11
transcription factor
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
210
August, 2021
141
February, 2021
134
May, 2020
126
August, 2017
126
November, 2017
114
February, 2023
105
May, 2021
97
October, 2019
96
May, 2022
47
September, 2023
40
March, 2020
40
September, 2020
27
July, 2019
24
February, 2020
23
May, 2019
19
April, 2020
18
October, 2018
17
December, 2017
16
April, 2019
9
October, 2017
8
February, 2018
8
January, 2018
8
January, 2021
8
June, 2019
8
November, 2018
5
December, 2018
5
December, 2019
4
January, 2019
4
March, 2023
3
May, 2023
1
August, 2018
1
October, 2022
1
September, 2018
0
August, 2020
Available data
107
tsv
57
txt
16
bed narrowPeak
16
bigWig
8
bam
8
tagAlign
2
bed bed3+
2
hic
1
bedpe bed3+
1
vcf
Organism
209
Homo sapiens
Biosample type
163
tissue
34
cell line
12
in vitro differentiated cells
1
primary cell
Organ
92
heart
66
kidney
32
liver
6
blood vessel
6
vasculature
5
connective tissue
pancreas
3
epithelium
2
artery
1
adipose tissue
Project
210
AMP
Genome assembly (visualization)
GRCh38
60
hg19
Lab
108
AMP-T2D consortium
64
Katalin Susztak, Upenn
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assembly!
GRCh38
month_released!
April, 2018
organ_slims!
pancreas
BIOSAMPLE
ASSAY
210 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
ATAC-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
8
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
1
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