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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
9
total RNA-seq
2
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
19
DNA binding
9
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
5
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
98
November, 2017
40
May, 2022
35
August, 2017
32
August, 2021
32
May, 2020
13
December, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
November, 2018
Available data
14
bed narrowPeak
14
bigWig
9
tsv
1
bam
1
bedpe bed3+
1
hic
1
tagAlign
1
vcf
Organism
32
Homo sapiens
Biosample type
31
cell line
1
primary cell
Organ
92
heart
66
kidney
32
liver
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
3
epithelium
2
artery
1
adipose tissue
Project
32
AMP
Genome assembly (visualization)
18
hg19
GRCh38
Lab
31
Bing Ren, UCSD
1
AMP-T2D consortium
assembly!
GRCh38
month_released!
August, 2018
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
primary cell
hepatocyte
1
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