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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 106single cell RNA-seq
  • 59total RNA-seq
  • 27ChIP-seq
  • 6snATAC-seq
  • 5STARR-seq
  • 4Capture-C
  • 3Hi-C
  • 2ATAC-seq
  • 1RNA microarray
  • 1whole genome sequencing assay
Assay category
  • 165Transcription
  • 27DNA binding
  • 8DNA accessibility
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 12control
  • 11transcription factor
  • 4histone
  • 4histone modification
  • 2broad histone mark
  • 2narrow histone mark
  • 1RNA binding protein
Date released
  • 214August, 2021
  • 200May, 2022
  • 170February, 2023
  • 162August, 2017
  • 147February, 2021
  • 134May, 2020
  • 126November, 2017
  • 123May, 2021
  • 107October, 2019
  • 56September, 2020
  • 48March, 2020
  • 47September, 2023
  • 29July, 2019
  • 29October, 2018
  • 25February, 2020
  • 24May, 2019
  • 19April, 2020
  • 17December, 2017
  • 16April, 2019
  • 16January, 2021
  • 10November, 2020
  • 9November, 2018
  • 9October, 2017
  • 8February, 2018
  • 8January, 2018
  • 8June, 2019
  • 5December, 2018
  • 5December, 2019
  • 4January, 2019
  • 4July, 2018
  • 4March, 2023
  • 4November, 2019
  • 4October, 2022
  • 4September, 2017
  • 3March, 2019
  • 3May, 2023
  • 1August, 2018
  • 1August, 2022
  • 1September, 2018
Available data
  • 108tsv
  • 57txt
  • 16bed narrowPeak
  • 16bigWig
  • 8bam
  • 8tagAlign
  • 2bed bed3+
  • 2bedpe bed3+
  • 2hic
  • 1vcf
Organism
  • 213Homo sapiens
Biosample type
  • 165tissue
  • 36cell line
  • 12in vitro differentiated cells
  • 1primary cell
Organ
  • 92heart
  • 66kidney
  • 32liver
  • 6blood vessel
  • 6vasculature
  • 5connective tissue
  • 4pancreas
  • 3epithelium
  • 2artery
  • 1adipose tissue
Project
  • 214AMP
Genome assembly (visualization)
  • GRCh38
  • 60hg19
Lab
  • 110AMP-T2D consortium
  • 64Katalin Susztak, Upenn
  • 36Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 3inconsistent ontology term
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

214 results

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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
ATAC-seq
RNA microarray
whole genome sequencing assay
tissue
kidney84961
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
cell line
HepG2918211
EndoC_BH12
HEK293T2
Synthesized DNA1
in vitro differentiated cells
neural progenitor cell8
adipocyte11
osteoblast11
primary cell
hepatocyte1
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