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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93total RNA-seq
  • 68ATAC-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1single cell RNA-seq
Assay category
  • 94Transcription
  • 70DNA accessibility
Date released
  • 214August, 2021
  • 200May, 2022
  • 170February, 2023
  • 162August, 2017
  • 147February, 2021
  • 134May, 2020
  • 126November, 2017
  • 123May, 2021
  • 107October, 2019
  • 56September, 2020
  • 48March, 2020
  • 47September, 2023
  • 29July, 2019
  • 29October, 2018
  • 25February, 2020
  • 24May, 2019
  • 19April, 2020
  • 17December, 2017
  • 16April, 2019
  • 16January, 2021
  • 10November, 2020
  • 9November, 2018
  • 9October, 2017
  • 8February, 2018
  • 8January, 2018
  • 8June, 2019
  • 5December, 2018
  • 5December, 2019
  • 4January, 2019
  • 4July, 2018
  • 4March, 2023
  • 4November, 2019
  • 4October, 2022
  • 4September, 2017
  • 3March, 2019
  • 3May, 2023
  • 1August, 2018
  • 1August, 2022
  • 1September, 2018
Available data
  • 76fastq
  • 30bed narrowPeak
  • 16tsv
  • 10bed bed3
  • 7txt
  • 4bed bed3+
  • 3bed bedgraph
  • 3bigWig
Organism
  • 169Homo sapiens
Biosample type
  • 88primary cell
  • 60tissue
  • 16in vitro differentiated cells
  • 6cell line
Organ
  • 56pancreas
  • 52epithelium
  • 31eye
  • 14connective tissue
  • 8bone element
  • 8skeleton
  • 1adipose tissue
  • 1brain
  • 1heart
Project
  • 76HPAP
  • 71AMP
  • 23T1D
Genome assembly (visualization)
  • 45hg19
  • GRCh38
Lab
  • 76Klaus Kaestner, Upenn
  • 68AMP-T2D consortium
  • 23Kyle Gaulton, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 11inconsistent ontology term
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

170 results

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Clear Filters
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
primary cell
exocrine cell39
pancreatic alpha cell27
pancreatic beta cell10
gabaergic neuron3
glutamatergic neuron3
tissue
islet of Langerhans5112
retina215
pigmented layer of retina212
acetabular part of hip bone11
ilium11
in vitro differentiated cells
chondrocyte5
immature adipocyte22
adipocyte11
preadipocyte11
Progenitor cell of Hypothalamus (neural progenitor cell)1
cell line
EndoC_BH1321
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