Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 15RRBS
  • 8Hi-C
  • 4WGBS
  • 2FAIRE-seq
Assay category
  • 19DNA methylation
  • 83D chromatin structure
  • 2DNA accessibility
Date released
  • 214August, 2021
  • 200May, 2022
  • 170February, 2023
  • 162August, 2017
  • 147February, 2021
  • 134May, 2020
  • 126November, 2017
  • 123May, 2021
  • 107October, 2019
  • 56September, 2020
  • 48March, 2020
  • 47September, 2023
  • 29July, 2019
  • 29October, 2018
  • 25February, 2020
  • 24May, 2019
  • 19April, 2020
  • 17December, 2017
  • 16April, 2019
  • 16January, 2021
  • 10November, 2020
  • 9November, 2018
  • 9October, 2017
  • 8February, 2018
  • 8January, 2018
  • 8June, 2019
  • 5December, 2018
  • 5December, 2019
  • 4January, 2019
  • 4July, 2018
  • 4March, 2023
  • 4November, 2019
  • 4October, 2022
  • 4September, 2017
  • 3March, 2019
  • 3May, 2023
  • 1August, 2018
  • 1August, 2022
  • 1September, 2018
Available data
  • 15bed bedMethyl
  • 15bigBed bedMethyl
  • 6bigWig
  • 4bed bed3+
  • 4hdf5
  • 3bam
  • 2bed narrowPeak
  • 2bigBed narrowPeak
Organism
  • 29Homo sapiens
Biosample type
  • 16tissue
  • 13primary cell
Organ
  • 8epithelium
  • 6brain
  • 5kidney
  • 5musculature of body
  • 4heart
  • 4limb
  • 4vasculature
  • 3blood vessel
  • 3liver
  • 2connective tissue
  • 2pancreas
  • 1eye
  • 1pericardium
Project
  • 29AMP
Genome assembly (visualization)
  • 91hg19
  • GRCh38
Lab
  • 29AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

29 results

search-icontable-tab-icon
Clear Filters
RRBS
Hi-C
WGBS
FAIRE-seq
tissue
gastrocnemius medialis4
heart left ventricle12
kidney11
aorta1
brain1
primary cell
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
cardiac fibroblast1
cardiac muscle cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego