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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 77ATAC-seq
  • 41WGBS
  • 34single cell RNA-seq
  • 26total RNA-seq
  • 22snATAC-seq
Assay category
  • 99DNA accessibility
  • 60Transcription
  • 41DNA methylation
Date released
  • 214August, 2021
  • 200May, 2022
  • 170February, 2023
  • 162August, 2017
  • 147February, 2021
  • 134May, 2020
  • 126November, 2017
  • 123May, 2021
  • 107October, 2019
  • 56September, 2020
  • 48March, 2020
  • 47September, 2023
  • 29July, 2019
  • 29October, 2018
  • 25February, 2020
  • 24May, 2019
  • 19April, 2020
  • 17December, 2017
  • 16April, 2019
  • 16January, 2021
  • 10November, 2020
  • 9November, 2018
  • 9October, 2017
  • 8February, 2018
  • 8January, 2018
  • 8June, 2019
  • 5December, 2018
  • 5December, 2019
  • 4January, 2019
  • 4July, 2018
  • 4March, 2023
  • 4November, 2019
  • 4October, 2022
  • 4September, 2017
  • 3March, 2019
  • 3May, 2023
  • 1August, 2018
  • 1August, 2022
  • 1September, 2018
Available data
  • 134zippedFastqFolder
  • 38bed narrowPeak
  • 24bam
  • 24fastq
  • 20bigWig
  • 7txt
  • 1bed bed3+
Organism
  • 200Homo sapiens
Biosample type
  • 134primary cell
  • 66tissue
Organ
  • 104pancreas
  • 80epithelium
  • 40liver
  • 2musculature of body
Project
  • 134HPAP
  • 66AMP
Genome assembly (visualization)
  • 39hg19
Lab
  • 134Klaus Kaestner, Upenn
  • 40Karen Mohlke, UNC
  • 24Kyle Gaulton, UCSD
  • 2AMP-T2D consortium
Audit category:
  • 1audit script error
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

200 results

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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
primary cell
Langerhans cell3321
pancreatic alpha cell2225
pancreatic beta cell1316
pancreatic acinar cell4
tissue
liver2020
islet of Langerhans186
skeletal muscle tissue11
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