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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1663
candidate regulatory elements
1068
target gene predictions
870
histone modifications
809
binding sites
673
gene expression
474
accessible chromatin
167
differential activity
139
variant allelic effects
75
chromatin state
45
eQTL
6
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
pQTL
2
Fine-mapped variants
2
other
1
representative DNase hypersensitivity sites
Date released
2571
February, 2021
1664
September, 2022
292
May, 2021
287
June, 2020
286
September, 2023
162
February, 2024
99
October, 2022
98
May, 2020
95
August, 2021
70
March, 2023
56
January, 2021
56
March, 2020
44
November, 2022
43
May, 2022
39
February, 2020
35
August, 2017
29
March, 2024
25
February, 2023
21
January, 2020
19
April, 2020
9
August, 2018
2
January, 2018
2
May, 2024
1
April, 2019
1
August, 2020
1
August, 2022
1
January, 2022
1
July, 2020
1
June, 2021
1
November, 2019
1
November, 2020
1
October, 2019
Available data
5059
bed bed3+
793
tsv
120
bigWig
108
txt
34
bed bed9+
24
csv
16
bigBed narrowPeak
9
bigBed bed9
5
bed bed9
4
bam
3
bed gappedPeak
3
xls
Organism
6014
Homo sapiens
Biosample type
1984
cell line
1909
tissue
1711
primary cell
405
in vitro differentiated cells
4
stem cell
Organ
715
epithelium
547
kidney
338
connective tissue
314
brain
279
musculature of body
231
lung
216
pancreas
210
intestine
179
vasculature
166
limb
165
bodily fluid
162
heart
157
skin of body
156
blood
135
embryo
131
large intestine
130
blood vessel
109
extraembryonic component
96
liver
93
eye
86
stomach
67
mammary gland
66
adipose tissue
66
bone element
64
prostate gland
60
small intestine
54
lymph node
54
penis
54
placenta
48
adrenal gland
48
ureter
47
artery
37
gonad
37
thymus
31
esophagus
30
spinal cord
26
spleen
25
uterus
20
testis
18
lymphoid tissue
18
vein
16
lymphatic vessel
16
ovary
16
thyroid gland
mouth
14
nerve
12
bronchus
12
pituitary gland
11
bone marrow
10
breast
8
tongue
8
urinary bladder
7
skeleton
7
vagina
trachea
3
nose
1
pericardium
Project
5642
AMP
281
KPMP
56
T1D
19
LungMap
11
community
5
ITG
Genome assembly (visualization)
6934
hg19
GRCh38
4
hg18
assembly!
GRCh38
organ_slims!
mouth
trachea
BIOSAMPLE
TYPE
6014 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
gene expression
accessible chromatin
differential activity
variant allelic effects
chromatin state
eQTL
caQTL
hQTL
sQTL
variant to gene
meQTL
pQTL
Fine-mapped variants
other
representative DNase hypersensitivity sites
cell line
A549
21
19
1
2
1
EndoC_BH1
1
1
1
8
7
3
1
MCF-7
9
6
2
3
1
breast cancer cell
11
9
K562
7
7
1
2
1
1
+ See 756 more…
tissue
heart
37
20
1
1
3
2
2
stomach
40
21
1
1
3
kidney
29
14
2
1
7
1
1
1
brain
29
16
3
1
1
1
1
lung
33
17
1
+ See 232 more…
primary cell
CD8-positive, alpha-beta T cell
7
4
30
3
1
1
common myeloid progenitor, CD34-positive
27
14
monocyte
2
2
1
15
3
1
2
1
1
B cell
14
10
2
1
CD14-positive monocyte
8
19
+ See 382 more…
in vitro differentiated cells
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
1
1
4
4
neural progenitor cell
5
5
2
7
embryonic stem cell
1
1
1
6
5
cardiomyocytes
11
+ See 120 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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