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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
31
ATAC-seq
21
total RNA-seq
6
pCHi-C
4
WGBS
1
RNA microarray
1
RRBS
Assay category
58
DNA binding
31
DNA accessibility
21
Transcription
5
DNA methylation
Target of assay
33
histone
33
histone modification
25
control
20
broad histone mark
13
narrow histone mark
Date released
41
August, 2017
32
February, 2023
22
October, 2019
18
October, 2018
3
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
July, 2019
1
June, 2019
1
March, 2020
Available data
29
bed narrowPeak
21
fastq
20
bam
8
tagAlign
8
tsv
3
bigWig
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed narrowPeak
Organism
121
Homo sapiens
Biosample type
119
tissue
2
primary cell
1
in vitro differentiated cells
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
122
AMP
Genome assembly (visualization)
460
hg19
GRCh38
Lab
122
AMP-T2D consortium
assembly!
GRCh38
organ_slims!
mammary gland
skeleton
BIOSAMPLE
ASSAY
122 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
WGBS
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
36
3
islet of Langerhans
2
1
14
4
retina
15
3
pigmented layer of retina
12
2
subcutaneous adipose tissue
10
1
1
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primary cell
retinal pigment epithelial cell
1
1
in vitro differentiated cells
white fat cell
1
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