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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
73
ChIP-seq
18
total RNA-seq
9
Hi-C
7
ATAC-seq
7
RRBS
4
pCHi-C
1
FAIRE-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
73
DNA binding
19
Transcription
9
3D chromatin structure
9
DNA accessibility
7
DNA methylation
Target of assay
39
histone
39
histone modification
34
control
21
broad histone mark
18
narrow histone mark
Date released
84
February, 2021
28
November, 2017
26
August, 2017
14
February, 2020
11
July, 2019
9
February, 2023
9
October, 2017
8
October, 2019
5
March, 2020
5
May, 2019
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2021
Available data
89
txt
51
tagAlign
32
bam
23
bigWig
17
tsv
16
bed narrowPeak
14
bed broadPeak
8
fastq
5
bed bed3
5
bed bedMethyl
5
bigBed bedMethyl
4
bed bed3+
3
hdf5
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
Organism
205
Homo sapiens
Biosample type
194
tissue
11
primary cell
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
204
AMP
1
T1D
Genome assembly (visualization)
GRCh38
307
hg19
Lab
204
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
86
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
organ_slims!
embryo
BIOSAMPLE
ASSAY
205 results
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RNA microarray
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
single cell RNA-seq
snATAC-seq
tissue
bone element
84
skeletal muscle tissue
22
1
4
1
1
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
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primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
skeletal muscle cell
1
1
brain pericyte
1
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