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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 78ChIP-seq
  • 20ATAC-seq
  • 6total RNA-seq
  • 5pCHi-C
  • 4WGBS
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 78DNA binding
  • 20DNA accessibility
  • 6Transcription
  • 5DNA methylation
  • 13D chromatin structure
Target of assay
  • 44histone
  • 44histone modification
  • 34control
  • 28broad histone mark
  • 16narrow histone mark
Date released
  • 60August, 2017
  • 18October, 2018
  • 14February, 2023
  • 5August, 2021
  • 5February, 2021
  • 4October, 2019
  • 3June, 2019
  • 2February, 2020
  • 2July, 2019
  • 2March, 2020
  • 1August, 2018
  • 1January, 2018
  • 1May, 2021
Available data
  • 28bam
  • 26fastq
  • 22tagAlign
  • 8bed bed3+
  • 8bigWig
  • 5bed bed3
  • 4bed bedgraph
  • 4bed narrowPeak
  • 4tsv
  • 3bigBed narrowPeak
  • 1bed bedMethyl
  • 1bed broadPeak
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1hdf5
Organism
  • 117Homo sapiens
Biosample type
  • 67tissue
  • 43in vitro differentiated cells
  • 7primary cell
  • 1stem cell
Organ
  • 311pancreas
  • 260liver
  • 230epithelium
  • 149kidney
  • 127heart
  • 118connective tissue
  • 93bone element
  • 69brain
  • 67adipose tissue
  • 55eye
  • 45vasculature
  • 43blood vessel
  • 43musculature of body
  • 26limb
  • 20lung
  • 15blood
  • 15bodily fluid
  • 13artery
  • 12nerve
  • 10vein
  • 9spleen
  • 8embryo
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 117AMP
  • 1T1D
Genome assembly (visualization)
  • 589hg19
  • GRCh38
Lab
  • 113AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 8inconsistent ontology term
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

118 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
WGBS
Capture-C
Hi-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue1011
omental fat pad81
adipose tissue1311
islet of Langerhans1
in vitro differentiated cells
adipocyte19811
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
primary cell
cardiac fibroblast21
adult endothelial progenitor cell1
brain pericyte1
mesenchymal stem cell1
osteoblast1
stem cell
mesenchymal stem cell1
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