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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 69ATAC-seq
  • 55total RNA-seq
  • 47WGBS
  • 32ChIP-seq
  • 8Hi-C
  • 6MeRIP-seq
  • 6RRBS
  • 2Capture-C
  • 2DNase-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
  • 1RNA microarray
Assay category
  • 72DNA accessibility
  • 55Transcription
  • 53DNA methylation
  • 32DNA binding
  • 83D chromatin structure
Target of assay
  • 30control
  • 5histone
  • 5histone modification
  • 4broad histone mark
  • 3nucleotide modification
  • 1narrow histone mark
Date released
  • 80May, 2022
  • 52February, 2023
  • 17May, 2021
  • 16September, 2020
  • 12August, 2017
  • 12October, 2019
  • 8July, 2019
  • 6February, 2021
  • 6November, 2020
  • 3August, 2021
  • 3December, 2017
  • 3March, 2020
  • 3November, 2019
  • 3October, 2022
  • 2June, 2019
  • 2November, 2017
  • 1December, 2019
  • 1May, 2019
Available data
  • 80zippedFastqFolder
  • 76fastq
  • 33bam
  • 13bed narrowPeak
  • 10tsv
  • 9bigWig
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2bed bed3+
  • 2bed broadPeak
  • 2bigBed broadPeak
  • 2hdf5
  • 2tagAlign
  • 1bigBed narrowPeak
  • 1tar
Organism
  • 229Homo sapiens
Biosample type
  • 181primary cell
  • 30cell line
  • 15tissue
  • 4in vitro differentiated cells
Organ
  • 311pancreas
  • 260liver
  • 230epithelium
  • 149kidney
  • 127heart
  • 118connective tissue
  • 93bone element
  • 69brain
  • 67adipose tissue
  • 55eye
  • 45vasculature
  • 43blood vessel
  • 43musculature of body
  • 26limb
  • 20lung
  • 15blood
  • 15bodily fluid
  • 13artery
  • 12nerve
  • 10vein
  • 9spleen
  • 8embryo
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 142HPAP
  • 88AMP
Genome assembly (visualization)
  • 311hg19
  • GRCh38
Lab
  • 142Klaus Kaestner, Upenn
  • 82AMP-T2D consortium
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 34inconsistent ontology term
  • 5audit script error
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

230 results

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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell22423161
pancreatic beta cell13111661
endothelial cell of umbilical vein721
pancreatic acinar cell41
epithelial cell of proximal tubule21
cell line
EndoC_BH11821621
tissue
pigmented layer of retina122
renal glomerulus1
in vitro differentiated cells
Hepatic endoderm2
hepatocyte1
pancreatic PP cell1
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