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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
28
ATAC-seq
24
ChIP-seq
22
total RNA-seq
7
pCHi-C
3
Hi-C
3
RRBS
2
WGBS
Assay category
115
Transcription
28
DNA accessibility
24
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
21
control
3
histone
3
histone modification
3
narrow histone mark
Date released
92
August, 2021
32
February, 2023
22
October, 2019
11
April, 2019
6
May, 2019
5
July, 2019
5
March, 2020
4
February, 2020
3
June, 2019
2
February, 2021
Available data
103
tsv
28
bed narrowPeak
21
bam
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
3
hic
2
tagAlign
1
bigWig
Organism
182
Homo sapiens
Biosample type
175
tissue
5
primary cell
2
cell line
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
182
AMP
Genome assembly (visualization)
GRCh38
222
hg19
Lab
182
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assembly!
GRCh38
organ_slims!
blood
BIOSAMPLE
ASSAY
182 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
total RNA-seq
pCHi-C
Hi-C
RRBS
WGBS
tissue
heart left ventricle
18
7
1
1
1
2
heart right ventricle
17
2
1
1
islet of Langerhans
1
2
14
4
right cardiac atrium
18
1
1
left cardiac atrium
18
+ See 13 more…
primary cell
cardiac fibroblast
2
1
retinal pigment epithelial cell
1
1
cell line
smooth muscle cell of the coronary artery
2
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