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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
30
total RNA-seq
20
ATAC-seq
7
pCHi-C
4
Hi-C
4
WGBS
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
196
DNA binding
31
Transcription
21
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
107
control
52
transcription factor
37
histone
37
histone modification
23
narrow histone mark
14
broad histone mark
7
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
40
May, 2022
35
August, 2017
32
August, 2021
32
May, 2020
13
December, 2017
6
March, 2020
4
October, 2019
3
July, 2019
2
February, 2021
1
December, 2018
1
February, 2020
1
November, 2018
Available data
150
bam
122
fastq
94
bigWig
74
bed narrowPeak
55
tagAlign
32
bigBed narrowPeak
16
tsv
14
bed broadPeak
14
bigBed broadPeak
3
tar
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
hdf5
1
vcf
Organism
268
Homo sapiens
Biosample type
133
cell line
131
tissue
3
primary cell
1
in vitro differentiated cells
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
268
AMP
Genome assembly (visualization)
625
hg19
GRCh38
Lab
197
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
268 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
WGBS
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
117
9
2
2
2
1
tissue
liver
70
20
20
1
1
3
1
1
right lobe of liver
3
1
1
1
islet of Langerhans
4
gastric (mucosa of stomach)
1
ovary
1
+ See 2 more…
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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