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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
1
ChIP-seq
Assay category
96
Transcription
4
DNA methylation
3
3D chromatin structure
1
DNA binding
Target of assay
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
5
March, 2020
4
July, 2019
3
February, 2020
1
April, 2019
1
February, 2023
1
October, 2019
Available data
98
tsv
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
1
bed narrowPeak
1
bigWig
Organism
107
Homo sapiens
Biosample type
106
tissue
1
primary cell
Organ
260
pancreas
200
epithelium
liver
137
kidney
107
heart
93
bone element
84
connective tissue
54
eye
43
adipose tissue
41
brain
37
musculature of body
23
vasculature
22
blood vessel
20
lung
9
blood
9
bodily fluid
9
limb
8
skeleton
8
vein
5
gonad
5
ovary
4
artery
2
embryo
2
intestine
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
107
AMP
Genome assembly (visualization)
GRCh38
188
hg19
Lab
107
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
GRCh38
organ_slims!
bone marrow
liver
target.investigated_as!
control
BIOSAMPLE
ASSAY
107 results
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single cell RNA-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
ChIP-seq
tissue
heart left ventricle
18
1
1
1
2
1
heart right ventricle
17
1
1
right cardiac atrium
18
1
left cardiac atrium
18
aortic valve
4
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primary cell
cardiac fibroblast
1
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