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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93single cell RNA-seq
  • 21ChIP-seq
  • 3Hi-C
  • 3pCHi-C
  • 3total RNA-seq
  • 2RRBS
  • 2WGBS
Assay category
  • 96Transcription
  • 21DNA binding
  • 4DNA methylation
  • 33D chromatin structure
Target of assay
  • 20control
  • 1histone
  • 1histone modification
  • 1narrow histone mark
Date released
  • 92August, 2021
  • 11April, 2019
  • 6May, 2019
  • 5March, 2020
  • 4July, 2019
  • 3February, 2020
  • 2February, 2021
  • 2June, 2019
  • 1February, 2023
  • 1October, 2019
Available data
  • 98tsv
  • 20bam
  • 3bedpe bed3+
  • 3hic
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2tagAlign
  • 1bed narrowPeak
  • 1bigWig
Organism
  • 127Homo sapiens
Biosample type
  • 122tissue
  • 3primary cell
  • 2cell line
Organ
  • 311pancreas
  • 260liver
  • 230epithelium
  • 149kidney
  • 127heart
  • 118connective tissue
  • 93bone element
  • 69brain
  • 67adipose tissue
  • 55eye
  • 45vasculature
  • 43blood vessel
  • 43musculature of body
  • 26limb
  • 20lung
  • 15blood
  • 15bodily fluid
  • 13artery
  • 12nerve
  • 10vein
  • 9spleen
  • 8embryo
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 127AMP
Genome assembly (visualization)
  • GRCh38
  • 188hg19
Lab
  • 127AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

127 results

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Clear Filters
single cell RNA-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
heart left ventricle1871112
heart right ventricle17211
right cardiac atrium1811
left cardiac atrium18
aortic valve4
primary cell
cardiac fibroblast21
cell line
smooth muscle cell of the coronary artery2
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