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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
49
total RNA-seq
9
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
113
Transcription
9
DNA binding
7
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
9
control
1
RNA binding protein
transcription factor
Date released
66
August, 2021
47
September, 2023
8
February, 2021
5
October, 2019
4
April, 2019
3
May, 2023
2
December, 2019
2
July, 2019
2
March, 2020
Available data
62
txt
11
tsv
10
bam
5
csv
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
1
bigWig
1
hic
Organism
139
Homo sapiens
Biosample type
132
tissue
7
cell line
Organ
296
pancreas
epithelium
175
liver
148
kidney
126
heart
93
bone element
74
connective tissue
53
eye
50
brain
40
vasculature
38
blood vessel
36
adipose tissue
24
limb
23
musculature of body
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
skeleton
7
embryo
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
92
AMP
47
KPMP
Genome assembly (visualization)
GRCh38
75
hg19
Lab
67
Katalin Susztak, Upenn
47
KPMP
23
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
6
audit script error
5
inconsistent ontology term
assembly!
GRCh38
organ_slims!
epithelium
target.investigated_as!
histone
transcription factor
BIOSAMPLE
ASSAY
139 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RNA microarray
RRBS
tissue
kidney
64
49
6
6
1
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
cell line
HEK293T
2
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
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