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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 64single cell RNA-seq
  • 49total RNA-seq
  • 13ChIP-seq
  • 6snATAC-seq
  • 4RRBS
  • 3snDrop-seq
  • 2DNase-seq
  • 2RNA microarray
  • 2STARR-seq
  • 2pCHi-C
  • 1FAIRE-seq
  • 1Hi-C
Assay category
  • 113Transcription
  • 13DNA binding
  • 9DNA accessibility
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 12control
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 66August, 2021
  • 47September, 2023
  • 8February, 2021
  • 8October, 2019
  • 5April, 2019
  • 5July, 2019
  • 3December, 2019
  • 3May, 2023
  • 2March, 2020
  • 1June, 2019
  • 1May, 2019
Available data
  • 62txt
  • 14bam
  • 12tsv
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1bed narrowPeak
  • 1bigBed narrowPeak
  • 1bigWig
  • 1hic
Organism
  • 149Homo sapiens
Biosample type
  • 134tissue
  • 8primary cell
  • 7cell line
Organ
  • 311pancreas
  • 260liver
  • 230epithelium
  • 149kidney
  • 127heart
  • 118connective tissue
  • 93bone element
  • 69brain
  • 67adipose tissue
  • 55eye
  • 45vasculature
  • 43blood vessel
  • 43musculature of body
  • 26limb
  • 20lung
  • 15blood
  • 15bodily fluid
  • 13artery
  • 12nerve
  • 10vein
  • 9spleen
  • 8embryo
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 102AMP
  • 47KPMP
Genome assembly (visualization)
  • GRCh38
  • 129hg19
Lab
  • 67Katalin Susztak, Upenn
  • 47KPMP
  • 33AMP-T2D consortium
  • 2Bing Ren, UCSD
Audit category:
  • 8inconsistent ontology term
  • 7audit script error
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

149 results

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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
DNase-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
tissue
kidney644976111
kidney (Cortex-Medulla)1
kidney (cortex)1
kidney (medulla)1
kidney interstitium1
primary cell
epithelial cell of proximal tubule21
kidney epithelial cell11
kidney glomerular epithelial cell1
kidney tubule cell1
renal cortical epithelial cell1
cell line
HEK293T2
RCC 7860 vector11
RCC 7860 HIF1a re-expression1
RCC 7860 HIF2a over-expression1
RCC 7860 VHL1
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