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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 192ChIP-seq
  • 30total RNA-seq
  • 20ATAC-seq
  • 4Hi-C
  • 4WGBS
  • 3pCHi-C
  • 2RRBS
  • 2STARR-seq
  • 1DNase-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 192DNA binding
  • 31Transcription
  • 21DNA accessibility
  • 6DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 107control
  • 52transcription factor
  • 33histone
  • 33histone modification
  • 19narrow histone mark
  • 14broad histone mark
  • 7RNA binding protein
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 98November, 2017
  • 40May, 2022
  • 35August, 2017
  • 32August, 2021
  • 32May, 2020
  • 13December, 2017
  • 3July, 2019
  • 2February, 2021
  • 2March, 2020
  • 1December, 2018
  • 1February, 2020
  • 1November, 2018
Available data
  • 150bam
  • 122fastq
  • 94bigWig
  • 74bed narrowPeak
  • 55tagAlign
  • 32bigBed narrowPeak
  • 14bed broadPeak
  • 14bigBed broadPeak
  • 12tsv
  • 3tar
  • 2bed bed3+
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hic
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 260Homo sapiens
Biosample type
  • 133cell line
  • 123tissue
  • 3primary cell
  • 1in vitro differentiated cells
Organ
  • 311pancreas
  • 260liver
  • 230epithelium
  • 149kidney
  • 127heart
  • 118connective tissue
  • 93bone element
  • 69brain
  • 67adipose tissue
  • 55eye
  • 45vasculature
  • 43blood vessel
  • 43musculature of body
  • 26limb
  • 20lung
  • 15blood
  • 15bodily fluid
  • 13artery
  • 12nerve
  • 10vein
  • 9spleen
  • 8embryo
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 260AMP
Genome assembly (visualization)
  • 625hg19
  • GRCh38
Lab
  • 189AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 8missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

260 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG211792221
tissue
liver70202013111
right lobe of liver3111
primary cell
hepatocyte11
endothelial cell of hepatic sinusoid1
in vitro differentiated cells
hepatocyte1
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