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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93ATAC-seq
  • 73total RNA-seq
  • 61ChIP-seq
  • 47WGBS
  • 11snATAC-seq
  • 10MeRIP-seq
  • 8Hi-C
  • 2Capture-C
  • 2FAIRE-seq
  • 2RRBS
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 106DNA accessibility
  • 73Transcription
  • 61DNA binding
  • 49DNA methylation
  • 83D chromatin structure
Target of assay
  • 51control
  • 15histone
  • 15histone modification
  • 9broad histone mark
  • 6narrow histone mark
  • 5nucleotide modification
Date released
  • 104May, 2022
  • 56February, 2023
  • 36August, 2017
  • 18May, 2021
  • 16September, 2020
  • 11October, 2018
  • 10November, 2020
  • 10October, 2019
  • 8January, 2021
  • 8March, 2020
  • 6February, 2021
  • 4August, 2021
  • 4July, 2018
  • 4November, 2019
  • 4September, 2017
  • 3March, 2019
  • 3October, 2022
  • 2July, 2019
  • 1August, 2022
  • 1February, 2020
  • 1May, 2019
  • 1November, 2018
Available data
  • 114fastq
  • 80zippedFastqFolder
  • 68bam
  • 26bed narrowPeak
  • 12bigWig
  • 11tagAlign
  • 11tsv
  • 7bed broadPeak
  • 7bedpe bed3+
  • 7hic
  • 6txt
  • 3cool
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2bigBed narrowPeak
  • 1bedpe
Organism
  • 309Homo sapiens
Biosample type
  • 154primary cell
  • 119tissue
  • 37cell line
  • 1in vitro differentiated cells
Organ
  • 311pancreas
  • 260liver
  • 230epithelium
  • 149kidney
  • 127heart
  • 118connective tissue
  • 93bone element
  • 69brain
  • 67adipose tissue
  • 55eye
  • 45vasculature
  • 43blood vessel
  • 43musculature of body
  • 26limb
  • 20lung
  • 15blood
  • 15bodily fluid
  • 13artery
  • 12nerve
  • 10vein
  • 9spleen
  • 8embryo
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 142HPAP
  • 141AMP
  • 28T1D
Genome assembly (visualization)
  • 658hg19
  • GRCh38
Lab
  • 142Klaus Kaestner, Upenn
  • 103AMP-T2D consortium
  • 51Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 3Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 29inconsistent ontology term
  • 4audit script error
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

311 results

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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
FAIRE-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell22426311
pancreatic beta cell13116161
pancreatic acinar cell41
tissue
islet of Langerhans36182574311
pancreas1341111
body of pancreas19
endocrine pancreas2
cell line
EndoC_BH11826121
Panc17
in vitro differentiated cells
pancreatic PP cell1
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