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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
single cell RNA-seq
5
ChIP-seq
5
Hi-C
3
pCHi-C
3
total RNA-seq
1
FAIRE-seq
1
RRBS
1
WGBS
Assay category
9
Transcription
5
3D chromatin structure
5
DNA binding
2
DNA methylation
1
DNA accessibility
Target of assay
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
7
October, 2019
6
August, 2021
4
July, 2019
4
March, 2020
3
February, 2020
1
May, 2021
Available data
11
tsv
7
bam
5
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
hdf5
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
1
tar
Organism
25
Homo sapiens
Biosample type
14
tissue
11
primary cell
Organ
260
pancreas
200
epithelium
153
liver
137
kidney
107
heart
93
bone element
84
connective tissue
54
eye
43
adipose tissue
41
brain
37
musculature of body
23
vasculature
22
blood vessel
20
lung
9
blood
9
bodily fluid
9
limb
8
skeleton
8
vein
5
gonad
5
ovary
4
artery
2
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
24
AMP
1
T1D
Genome assembly (visualization)
GRCh38
163
hg19
Lab
24
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
assembly!
GRCh38
target.investigated_as!
control
BIOSAMPLE
ASSAY
25 results
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single cell RNA-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
FAIRE-seq
RRBS
WGBS
tissue
aorta
4
1
1
1
pulmonary artery
2
thymus
2
ascending aorta
1
coronary artery
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
5
2
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
See all biosamples
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