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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 27ChIP-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 3total RNA-seq
  • 1FAIRE-seq
  • 1RRBS
  • 1WGBS
  • 1pCHi-C
Assay category
  • 27DNA binding
  • 9Transcription
  • 53D chromatin structure
  • 2DNA methylation
  • 1DNA accessibility
Target of assay
  • 22control
  • 5histone
  • 5histone modification
  • 4broad histone mark
  • 1narrow histone mark
Date released
  • 14October, 2019
  • 11May, 2019
  • 6August, 2021
  • 4July, 2019
  • 3February, 2020
  • 3March, 2020
  • 2February, 2021
  • 2November, 2017
Available data
  • 29bam
  • 10tsv
  • 7bigWig
  • 3hic
  • 2bed bed3+
  • 2bed broadPeak
  • 2bedpe bed3+
  • 2bigBed broadPeak
  • 2fastq
  • 2hdf5
  • 2tagAlign
  • 1bed bedMethyl
  • 1bed narrowPeak
  • 1bigBed bedMethyl
  • 1bigBed narrowPeak
  • 1tar
Organism
  • 45Homo sapiens
Biosample type
  • 28tissue
  • 15primary cell
  • 2cell line
Organ
  • 311pancreas
  • 260liver
  • 230epithelium
  • 149kidney
  • 127heart
  • 118connective tissue
  • 93bone element
  • 69brain
  • 67adipose tissue
  • 55eye
  • 45vasculature
  • 43blood vessel
  • 43musculature of body
  • 26limb
  • 20lung
  • 15blood
  • 15bodily fluid
  • 13artery
  • 12nerve
  • 10vein
  • 9spleen
  • 8embryo
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 45AMP
Genome assembly (visualization)
  • GRCh38
  • 165hg19
Lab
  • 45AMP-T2D consortium
Audit category:
  • 1audit script error
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

45 results

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Clear Filters
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
FAIRE-seq
RRBS
WGBS
pCHi-C
tissue
aorta24111
tibial artery51
ascending aorta31
thoracic aorta4
coronary artery21
primary cell
endothelial cell of umbilical vein721
brain microvascular endothelial cell11
choroid plexus epithelial cell11
endothelial cell of hepatic sinusoid1
cell line
smooth muscle cell of the coronary artery2
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