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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 604ChIP-seq
  • 297ATAC-seq
  • 83snATAC-seq
  • 58WGBS
  • 57pCHi-C
  • 32Hi-C
  • 21RRBS
  • 5DNase-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 604DNA binding
  • 390DNA accessibility
  • 80DNA methylation
  • 323D chromatin structure
  • 1DNA sequencing
Target of assay
  • 325control
  • 213histone
  • 213histone modification
  • 109broad histone mark
  • 104narrow histone mark
  • 66transcription factor
  • 14RNA binding protein
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 161August, 2017
  • 140May, 2022
  • 132May, 2020
  • 126November, 2017
  • 114May, 2021
  • 93October, 2019
  • 75February, 2023
  • 46March, 2020
  • 43August, 2021
  • 42February, 2021
  • 29July, 2019
  • 29October, 2018
  • 24May, 2019
  • 17December, 2017
  • 16April, 2019
  • 16January, 2021
  • 9April, 2020
  • 9October, 2017
  • 8February, 2018
  • 8January, 2018
  • 8June, 2019
  • 8November, 2018
  • 5December, 2018
  • 4January, 2019
  • 4November, 2019
  • 4September, 2017
  • 3March, 2019
  • 3October, 2022
  • 1August, 2018
  • 1August, 2022
Available data
  • 426bam
  • 272fastq
  • 237bigWig
  • 185bed narrowPeak
  • 151tagAlign
  • 101zippedFastqFolder
  • 51tsv
  • 44bigBed narrowPeak
  • 40bed broadPeak
  • 23bedpe bed3+
  • 22hic
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 18bigBed broadPeak
  • 13bed bed3+
  • 10bed bed3
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 1178Homo sapiens
Biosample type
  • 513tissue
  • 368primary cell
  • 174cell line
  • 118in vitro differentiated cells
  • 5stem cell
Organ
  • 227liver
  • 226pancreas
  • 167epithelium
  • 111connective tissue
  • 64adipose tissue
  • 57brain
  • 40musculature of body
  • 36eye
  • 36vasculature
  • 34blood vessel
  • 31heart
  • 29kidney
  • 23limb
  • 15blood
  • 15bodily fluid
  • 11nerve
  • 10lung
  • 10vein
  • 9artery
  • 9spleen
  • 8embryo
  • 5bone element
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 981AMP
  • 137HPAP
  • 51T1D
  • 9LungMap
Genome assembly (visualization)
  • 1875hg19
  • GRCh38
  • 5hg18
Lab
  • 830AMP-T2D consortium
  • 144Kyle Gaulton, UCSD
  • 137Klaus Kaestner, Upenn
  • 22Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 7Katalin Susztak, Upenn
  • 7Struan F.A. Grant, CHOP
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 61inconsistent ontology term
  • 33audit script error
Audit category:
  • 10missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

1178 results

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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
FAIRE-seq
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
HiChIP
DNAme array
whole genome sequencing assay
tissue
islet of Langerhans464674311
liver70203111
subcutaneous abdominal adipose tissue363
skeletal muscle tissue22114
kidney76111
primary cell
pancreatic alpha cell622311
Langerhans cell48
CD8-positive, alpha-beta T cell3321
pancreatic beta cell613161
naive thymus-derived CD4-positive, alpha-beta T cell2221
cell line
HepG2117221
EndoC_BH12181232
GM1287861
Panc17
RCC 7860 vector11
in vitro differentiated cells
embryonic stem cell3861
adipocyte1981
neural progenitor cell8
pancreatic endoderm51
chondrocyte5
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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