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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 505ChIP-seq
  • 261single cell RNA-seq
  • 250total RNA-seq
  • 233ATAC-seq
  • 87RNA microarray
  • 77snATAC-seq
  • 51WGBS
  • 36pCHi-C
  • 23Hi-C
  • 5GRO-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 515Transcription
  • 505DNA binding
  • 317DNA accessibility
  • 54DNA methylation
  • 233D chromatin structure
  • 1DNA sequencing
Target of assay
  • 279control
  • 205histone
  • 205histone modification
  • 103broad histone mark
  • 102narrow histone mark
  • 23transcription factor
  • 7RNA binding protein
  • 2nucleotide modification
  • 1recombinant protein
Date released
  • 204August, 2021
  • 200May, 2022
  • 164February, 2023
  • 153August, 2017
  • 136February, 2021
  • 110May, 2021
  • 89October, 2019
  • 78May, 2020
  • 56September, 2020
  • 54November, 2017
  • 47September, 2023
  • 38March, 2020
  • 29October, 2018
  • 25February, 2020
  • 22May, 2019
  • 19April, 2020
  • 16April, 2019
  • 16December, 2017
  • 13January, 2021
  • 9July, 2019
  • 9October, 2017
  • 8February, 2018
  • 8January, 2018
  • 7June, 2019
  • 6November, 2018
  • 4December, 2018
  • 4July, 2018
  • 4March, 2023
  • 4November, 2019
  • 4November, 2020
  • 4October, 2022
  • 4September, 2017
  • 3December, 2019
  • 3January, 2019
  • 3March, 2019
  • 3May, 2023
  • 1August, 2018
  • 1August, 2022
  • 1September, 2018
Available data
  • 333bam
  • 315fastq
  • 186tsv
  • 174bigWig
  • 158txt
  • 153zippedFastqFolder
  • 148tagAlign
  • 145bed narrowPeak
  • 22bed broadPeak
  • 18hic
  • 17bedpe bed3+
  • 10bed bed3
  • 10bed bed3+
  • 8bigBed narrowPeak
  • 8csv
  • 3cool
  • 1bedpe
  • 1vcf
Organism
  • 1550Homo sapiens
Biosample type
  • 897tissue
  • 452primary cell
  • 113in vitro differentiated cells
  • 90cell line
  • 7stem cell
Organ
  • 286pancreas
  • 199epithelium
  • 176liver
  • 134kidney
  • 124heart
  • 111connective tissue
  • 92bone element
  • 67adipose tissue
  • 64brain
  • 54eye
  • 39musculature of body
  • 33vasculature
  • 32blood vessel
  • 25limb
  • 20lung
  • 12artery
  • 12nerve
  • 11blood
  • 11bodily fluid
  • 9spleen
  • 8embryo
  • 8skeleton
  • 5gonad
  • 5ovary
  • 3vein
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1142AMP
  • 308HPAP
  • 47KPMP
  • 39T1D
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • GRCh38
  • 2549hg19
  • 5hg18
Lab
  • 893AMP-T2D consortium
  • 308Klaus Kaestner, Upenn
  • 144Kyle Gaulton, UCSD
  • 63Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 131inconsistent ontology term
  • 40audit script error
Audit category:
  • 3missing controlled_by
assembly!
  • GRCh38
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

1559 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
GRO-seq
Capture-C
FAIRE-seq
MeRIP-seq
DNase-seq
snDrop-seq
HiChIP
RRBS
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
...and 6 more
tissue
islet of Langerhans46324664314
kidney76449211
liver7012020311
bone element84
subcutaneous abdominal adipose tissue363
primary cell
Langerhans cell8548
pancreatic alpha cell64222251
pancreatic beta cell51113161
exocrine cell39
CD8-positive, alpha-beta T cell33221
in vitro differentiated cells
embryonic stem cell38551
adipocyte19141
neural progenitor cell8
pancreatic endoderm51
chondrocyte5
cell line
HepG24391
EndoC_BH12161221
GM1287821
EndoC-BH1
Panc12
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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