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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 154ATAC-seq
  • 133ChIP-seq
  • 49pCHi-C
  • 48total RNA-seq
  • 19RRBS
  • 17Hi-C
  • 12snATAC-seq
  • 10MeRIP-seq
  • 7WGBS
  • 6single cell RNA-seq
  • 4DNase-seq
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 174DNA accessibility
  • 133DNA binding
  • 54Transcription
  • 27DNA methylation
  • 173D chromatin structure
Target of assay
  • 65control
  • 55transcription factor
  • 18histone
  • 18histone modification
  • 13RNA binding protein
  • 13broad histone mark
  • 5narrow histone mark
  • 5nucleotide modification
  • 2chromatin remodeller
Date released
  • 103May, 2020
  • 72November, 2017
  • 53February, 2023
  • 43May, 2021
  • 39March, 2020
  • 25August, 2021
  • 25February, 2020
  • 24October, 2019
  • 22July, 2019
  • 15February, 2021
  • 10November, 2020
  • 9August, 2017
  • 6October, 2017
  • 5January, 2021
  • 4November, 2018
  • 3March, 2019
  • 3October, 2022
  • 2December, 2017
  • 2December, 2019
  • 2June, 2019
  • 2May, 2019
  • 2May, 2022
  • 1April, 2019
  • 1December, 2018
  • 1January, 2019
  • 1September, 2018
Available data
  • 161bam
  • 124bigWig
  • 96fastq
  • 78tsv
  • 46bed narrowPeak
  • 42bigBed narrowPeak
  • 19bed bedMethyl
  • 19bed broadPeak
  • 19bigBed bedMethyl
  • 18bigBed broadPeak
  • 18tagAlign
  • 13bedpe bed3+
  • 12bed bed3+
  • 11hic
  • 8txt
  • 7bed bedgraph
  • 5bed bed3
  • 4hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
Organism
  • 475Homo sapiens
Biosample type
  • 181primary cell
  • 127tissue
  • 108cell line
  • 58in vitro differentiated cells
  • 1stem cell
Organ
  • 89liver
  • 63pancreas
  • 38epithelium
  • 27brain
  • 27connective tissue
  • 21kidney
  • 17vasculature
  • 16blood vessel
  • 11heart
  • 9bone element
  • 9musculature of body
  • 8skeleton
  • 8vein
  • 6blood
  • 6bodily fluid
  • 5adipose tissue
  • 4limb
  • 3artery
  • 2eye
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 421AMP
  • 45T1D
  • 9HPAP
Genome assembly (visualization)
  • 1158hg19
  • GRCh38
Lab
  • 371AMP-T2D consortium
  • 63Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Bing Ren, UCSD
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 44inconsistent ontology term
  • 6audit script error
Audit category:
  • 7missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

475 results

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Clear Filters
ATAC-seq
ChIP-seq
pCHi-C
total RNA-seq
RRBS
Hi-C
snATAC-seq
MeRIP-seq
WGBS
single cell RNA-seq
DNase-seq
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
snDrop-seq
DNAme array
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell22211
CD4-positive, alpha-beta memory T cell22
macrophage111
endothelial cell of umbilical vein611
pancreatic alpha cell16
tissue
islet of Langerhans1581234
brain161
kidney1141
pancreas11121
liver1111
cell line
HepG274212
EndoC_BH1263
Panc15
GM128784
HEK293T2
in vitro differentiated cells
embryonic stem cell51115
adipocyte811
neural progenitor cell8
cardiomyocytes (cardiac muscle cell)222
immature adipocyte11
stem cell
mesenchymal stem cell1
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