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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 90ATAC-seq
  • 48total RNA-seq
  • 33ChIP-seq
  • 28pCHi-C
  • 8Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 4single cell RNA-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2DNase-seq
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 100DNA accessibility
  • 52Transcription
  • 33DNA binding
  • 83D chromatin structure
  • 1DNA methylation
Target of assay
  • 13control
  • 12transcription factor
  • 10histone
  • 10histone modification
  • 7broad histone mark
  • 6RNA binding protein
  • 3narrow histone mark
  • 2nucleotide modification
Date released
  • 47February, 2023
  • 47May, 2020
  • 30May, 2021
  • 29March, 2020
  • 25February, 2020
  • 15August, 2021
  • 6October, 2017
  • 6October, 2019
  • 4February, 2021
  • 4November, 2020
  • 3March, 2019
  • 3October, 2022
  • 2January, 2021
  • 2July, 2019
  • 2May, 2022
  • 1April, 2019
  • 1December, 2017
  • 1June, 2019
  • 1November, 2018
  • 1September, 2018
Available data
  • 64tsv
  • 61bam
  • 59bigWig
  • 14tagAlign
  • 7bed bed3+
  • 7bedpe bed3+
  • 7hic
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 5bed bed3
  • 5txt
  • 4fastq
  • 3cool
  • 2csv
  • 1bed broadPeak
  • 1bedpe
Organism
  • 230Homo sapiens
Biosample type
  • 106tissue
  • 81primary cell
  • 42in vitro differentiated cells
  • 1stem cell
Organ
  • 38pancreas
  • 22brain
  • 20connective tissue
  • 8bone element
  • 8heart
  • 8skeleton
  • 7epithelium
  • 6kidney
  • 5adipose tissue
  • 5blood vessel
  • 5liver
  • 5musculature of body
  • 5vasculature
  • 3limb
  • 2artery
  • 2blood
  • 2bodily fluid
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1eye
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 201AMP
  • 26T1D
  • 3HPAP
Genome assembly (visualization)
  • 494hg19
  • GRCh38
Lab
  • 170AMP-T2D consortium
  • 44Kyle Gaulton, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 18inconsistent ontology term
  • 4audit script error
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

230 results

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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
Hi-C
snATAC-seq
MeRIP-seq
single cell RNA-seq
FAIRE-seq
Capture-C
DNase-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans158224
brain16
adipose tissue21
liver111
pancreas111
primary cell
monocyte2111
naive thymus-derived CD4-positive, alpha-beta T cell121
CD8-positive, alpha-beta T cell21
gabaergic neuron3
glutamatergic neuron3
in vitro differentiated cells
embryonic stem cell45111
neural progenitor cell8
adipocyte411
immature adipocyte11
osteoblast11
stem cell
mesenchymal stem cell1
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