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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 100ChIP-seq
  • 64ATAC-seq
  • 21pCHi-C
  • 19RRBS
  • 9Hi-C
  • 7WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2DNase-seq
  • 2single cell RNA-seq
  • 1FAIRE-seq
Assay category
  • 100DNA binding
  • 74DNA accessibility
  • 26DNA methylation
  • 93D chromatin structure
  • 2Transcription
Target of assay
  • 52control
  • 43transcription factor
  • 8histone
  • 8histone modification
  • 7RNA binding protein
  • 6broad histone mark
  • 3nucleotide modification
  • 2chromatin remodeller
  • 2narrow histone mark
Date released
  • 72November, 2017
  • 56May, 2020
  • 20July, 2019
  • 18October, 2019
  • 13May, 2021
  • 11February, 2021
  • 10August, 2021
  • 10March, 2020
  • 9August, 2017
  • 6February, 2023
  • 6November, 2020
  • 3January, 2021
  • 3November, 2018
  • 2December, 2019
  • 2May, 2019
  • 1December, 2017
  • 1December, 2018
  • 1January, 2019
  • 1June, 2019
Available data
  • 100bam
  • 92fastq
  • 65bigWig
  • 40bed narrowPeak
  • 36bigBed narrowPeak
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 18bed broadPeak
  • 18bigBed broadPeak
  • 14tsv
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5bed bed3+
  • 4hdf5
  • 4hic
  • 4tagAlign
  • 4tar
  • 3txt
  • 2ibed
Organism
  • 245Homo sapiens
Biosample type
  • 108cell line
  • 100primary cell
  • 21tissue
  • 16in vitro differentiated cells
Organ
  • 84liver
  • 31epithelium
  • 25pancreas
  • 15kidney
  • 12vasculature
  • 11blood vessel
  • 7connective tissue
  • 7vein
  • 5brain
  • 4blood
  • 4bodily fluid
  • 4musculature of body
  • 3heart
  • 1artery
  • 1bone element
  • 1bone marrow
  • 1eye
  • 1limb
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 220AMP
  • 19T1D
  • 6HPAP
Genome assembly (visualization)
  • 664hg19
  • GRCh38
Lab
  • 201AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 26inconsistent ontology term
  • 2audit script error
Audit category:
  • 7missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

245 results

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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
RRBS
Hi-C
WGBS
snATAC-seq
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
DNase-seq
single cell RNA-seq
FAIRE-seq
cell line
HepG274212
EndoC_BH1263
Panc15
GM128784
HEK293T2
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
macrophage11
endothelial cell of umbilical vein61
pancreatic alpha cell6
tissue
kidney14
pancreas12
islet of Langerhans11
skeletal muscle tissue2
brain1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)122
adipocyte4
lymphocyte of B lineage (iPSC)11
Progenitor cell of Hypothalamus (neural progenitor cell)1
cardiac precursors (cardiac muscle cell)1
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