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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 472ChIP-seq
  • 257single cell RNA-seq
  • 202total RNA-seq
  • 143ATAC-seq
  • 87RNA microarray
  • 72snATAC-seq
  • 51WGBS
  • 15Hi-C
  • 8pCHi-C
  • 5GRO-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNase-seq
  • 1FAIRE-seq
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 472DNA binding
  • 463Transcription
  • 217DNA accessibility
  • 53DNA methylation
  • 153D chromatin structure
  • 1DNA sequencing
Target of assay
  • 266control
  • 195histone
  • 195histone modification
  • 99narrow histone mark
  • 96broad histone mark
  • 11transcription factor
  • 1RNA binding protein
  • 1recombinant protein
Date released
  • 198May, 2022
  • 189August, 2021
  • 153August, 2017
  • 132February, 2021
  • 117February, 2023
  • 83October, 2019
  • 80May, 2021
  • 56September, 2020
  • 54November, 2017
  • 47September, 2023
  • 31May, 2020
  • 29October, 2018
  • 22May, 2019
  • 19April, 2020
  • 15April, 2019
  • 15December, 2017
  • 11January, 2021
  • 9March, 2020
  • 8February, 2018
  • 8January, 2018
  • 7July, 2019
  • 6June, 2019
  • 5November, 2018
  • 4December, 2018
  • 4July, 2018
  • 4March, 2023
  • 4November, 2019
  • 4September, 2017
  • 3December, 2019
  • 3January, 2019
  • 3May, 2023
  • 3October, 2017
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 311fastq
  • 272bam
  • 153txt
  • 153zippedFastqFolder
  • 139bed narrowPeak
  • 134tagAlign
  • 122tsv
  • 115bigWig
  • 21bed broadPeak
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 3bed bed3+
  • 2bigBed narrowPeak
  • 1vcf
Organism
  • 1320Homo sapiens
Biosample type
  • 791tissue
  • 371primary cell
  • 90cell line
  • 71in vitro differentiated cells
  • 6stem cell
Organ
  • 248pancreas
  • 192epithelium
  • 171liver
  • 128kidney
  • 116heart
  • 91connective tissue
  • 84bone element
  • 62adipose tissue
  • 53eye
  • 42brain
  • 34musculature of body
  • 28vasculature
  • 27blood vessel
  • 22limb
  • 19lung
  • 11nerve
  • 10artery
  • 9blood
  • 9bodily fluid
  • 8embryo
  • 8spleen
  • 4gonad
  • 4ovary
  • 2vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 941AMP
  • 305HPAP
  • 47KPMP
  • 19LungMap
  • 13T1D
  • 4community
Genome assembly (visualization)
  • GRCh38
  • 2055hg19
  • 5hg18
Lab
  • 723AMP-T2D consortium
  • 305Klaus Kaestner, Upenn
  • 100Kyle Gaulton, UCSD
  • 63Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 28Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 113inconsistent ontology term
  • 36audit script error
Audit category:
  • 3missing controlled_by
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

1329 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
pCHi-C
GRO-seq
Capture-C
HiChIP
RRBS
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNase-seq
FAIRE-seq
MPRA
STARR-seq
...and 4 more
tissue
kidney6644921
liver69202031
islet of Langerhans4624314141
bone element84
subcutaneous abdominal adipose tissue363
primary cell
Langerhans cell8548
pancreatic alpha cell6422225
pancreatic beta cell5111316
exocrine cell39
CD8-positive, alpha-beta T cell332
cell line
HepG24391
EndoC_BH12161221
GM1287821
EndoC-BH1
Panc12
in vitro differentiated cells
embryonic stem cell271
adipocyte19
pancreatic endoderm51
chondrocyte5
Hepatic endoderm2
stem cell
SB Ad3.111
hESC1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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