Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • 1072target gene predictions
  • 872histone modifications
  • 833candidate regulatory elements
  • 811binding sites
  • 680gene expression
  • 521accessible chromatin
  • 172differential activity
  • 141variant allelic effects
  • 75chromatin state
  • 63eQTL
  • 12Fine-mapped variants
  • 7sQTL
  • 6caQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2639February, 2025
  • 1742February, 2021
  • 1672September, 2022
  • 292May, 2021
  • 289June, 2020
  • 286September, 2023
  • 161February, 2024
  • 144May, 2020
  • 99October, 2022
  • 95August, 2021
  • 70March, 2023
  • 56January, 2021
  • 56March, 2020
  • 44November, 2022
  • 43May, 2022
  • 39February, 2020
  • 38March, 2025
  • 35August, 2017
  • 30March, 2024
  • 26February, 2023
  • 21January, 2020
  • 19April, 2020
  • 9August, 2018
  • 2January, 2018
  • 2January, 2025
  • 2May, 2024
  • 1April, 2019
  • 1August, 2020
  • 1August, 2022
  • 1January, 2022
  • 1July, 2020
  • 1June, 2021
  • 1November, 2019
  • 1November, 2020
  • 1October, 2019
Available data
  • 4306bed bed3+
  • 3470tsv
  • 164bigWig
  • 108txt
  • 34bed bed9+
  • 26csv
  • 16bigBed narrowPeak
  • 9bigBed bed9
  • 5bed bed9
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 7874Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 1848ChIP-Atlas
  • 1666EpiMap
  • 582DGA
  • 281KPMP
  • 220T1D
  • 150 T2DKP
  • 149AMP
  • 122BLUEPRINT
  • 122ENCODE
  • 94CMDGA
  • 55GTEx
  • 55HPAP
  • 49T2DKP
  • 43STARNET
  • 12ROADMAP
  • 10T2D
Biosample type
  • 4111tissue
  • 1839cell line
  • 1604primary cell
  • 361in vitro differentiated cells
  • 4stem cell
Organ
  • 2797vasculature
  • 2784bodily fluid
  • 2777blood
  • 2754blood vessel
  • 2649vein
  • 663epithelium
  • 463kidney
  • 310connective tissue
  • 264brain
  • 206musculature of body
  • 205pancreas
  • 170lung
  • 152intestine
  • 128heart
  • 118limb
  • 116skin of body
  • 105embryo
  • 95large intestine
  • 92liver
  • 84eye
  • 83extraembryonic component
  • 65adipose tissue
  • 58stomach
  • 55bone element
  • 53mammary gland
  • 50prostate gland
  • 47artery
  • 42small intestine
  • 41lymph node
  • 41placenta
  • 36penis
  • 34adrenal gland
  • 30ureter
  • 28gonad
  • 28thymus
  • 22spinal cord
  • 21esophagus
  • 20uterus
  • 17spleen
  • 15testis
  • 14lymphatic vessel
  • 14lymphoid tissue
  • 12ovary
  • 12pituitary gland
  • 12thyroid gland
  • 11nerve
  • 10bone marrow
  • 10bronchus
  • 10mouth
  • 7breast
  • 7urinary bladder
  • 6skeleton
  • 6tongue
  • 5trachea
  • 5vagina
  • 3nose
  • 1pericardium
Project
  • 7546AMP
  • 281KPMP
  • 57T1D
  • 19LungMap
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 6164hg19
  • GRCh38
  • 4hg18
assembly!
  • GRCh38
software_used.software.name!
  • encode-ccres
BIOSAMPLE
TYPE

7921 results

search-icontable-tab-icon
Clear Filters
pQTL
target gene predictions
histone modifications
candidate regulatory elements
binding sites
gene expression
accessible chromatin
differential activity
variant allelic effects
chromatin state
eQTL
Fine-mapped variants
sQTL
caQTL
hQTL
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
whole blood26351
heart201191322
stomach2111913
kidney1421417111
brain163161111
cell line
A5491911821
EndoC_BH11118731
breast cancer cell119
K562716211
MCF-762531
primary cell
CD8-positive, alpha-beta T cell430331
monocyte2211551121
common myeloid progenitor, CD34-positive1413
B cell10823
CD14-positive monocyte194
in vitro differentiated cells
hematopoietic multipotent progenitor cell10110111
adipocyte6121144
neural progenitor cell5247
embryonic stem cell11165
cardiomyocytes11
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego