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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 14ChIP-seq
Assay category
  • 14DNA binding
Target of assay
  • 331control
  • 213histone
  • 213histone modification
  • 109broad histone mark
  • 104narrow histone mark
  • 66transcription factor
  • 14RNA binding protein
  • 5nucleotide modification
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 6November, 2017
  • 5May, 2021
  • 1April, 2019
  • 1August, 2017
  • 1August, 2021
Available data
  • 8bam
  • 7fastq
  • 6bed narrowPeak
  • 6bigWig
  • 5bigBed narrowPeak
  • 2bed broadPeak
  • 2bigBed broadPeak
  • 1tar
Organism
  • 14Homo sapiens
Biosample type
  • 7cell line
  • 5in vitro differentiated cells
  • 1primary cell
  • 1tissue
Organ
  • 7liver
  • 1kidney
Project
  • 14AMP
Genome assembly (visualization)
  • GRCh38
  • 100hg19
Lab
  • 8AMP-T2D consortium
  • 5Kyle Gaulton, UCSD
  • 1Bing Ren, UCSD
Audit category:
  • 1missing controlled_by
Audit category:
  • 1inconsistent control read length
  • 1inconsistent control run_type
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

14 results

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ChIP-seq
cell line
HepG27
in vitro differentiated cells
embryonic stem cell5
primary cell
skeletal muscle myoblast1
tissue
kidney1
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