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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 109ChIP-seq
Assay category
  • 109DNA binding
Target of assay
  • 331control
  • 213histone
  • 213histone modification
  • 109broad histone mark
  • 104narrow histone mark
  • 66transcription factor
  • 14RNA binding protein
  • 5nucleotide modification
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 60August, 2017
  • 32May, 2021
  • 5November, 2017
  • 5October, 2017
  • 5October, 2019
  • 2August, 2021
Available data
  • 45tagAlign
  • 36bigWig
  • 33bed narrowPeak
  • 15bed broadPeak
  • 6bam
  • 3bigBed broadPeak
  • 2fastq
Organism
  • 109Homo sapiens
Biosample type
  • 61tissue
  • 26primary cell
  • 19in vitro differentiated cells
  • 3cell line
Organ
  • 28connective tissue
  • 20adipose tissue
  • 14liver
  • 12musculature of body
  • 9brain
  • 9pancreas
  • 4blood vessel
  • 4epithelium
  • 4vasculature
  • 4vein
Project
  • 109AMP
Genome assembly (visualization)
  • GRCh38
  • 371hg19
Lab
  • 78AMP-T2D consortium
  • 30Kyle Gaulton, UCSD
  • 1Bing Ren, UCSD
Audit category:
  • 1missing controlled_by
Audit category:
  • 1inconsistent control read length
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

109 results

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Clear Filters
ChIP-seq
tissue
subcutaneous abdominal adipose tissue20
liver12
skeletal muscle tissue12
islet of Langerhans8
brain5
primary cell
CD8-positive, alpha-beta T cell20
endothelial cell of umbilical vein4
naive thymus-derived CD4-positive, alpha-beta T cell1
neutrophil1
in vitro differentiated cells
embryonic stem cell10
adipocyte8
neural progenitor cell1
cell line
HepG22
Panc11
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