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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 326ChIP-seq
  • 5MeRIP-seq
Assay category
  • 326DNA binding
Target of assay
  • 331control
  • 213histone
  • 213histone modification
  • 109broad histone mark
  • 104narrow histone mark
  • 66transcription factor
  • 14RNA binding protein
  • 5nucleotide modification
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 71November, 2017
  • 48August, 2017
  • 39October, 2019
  • 29October, 2018
  • 23May, 2019
  • 23May, 2020
  • 16December, 2017
  • 14April, 2019
  • 12August, 2021
  • 9May, 2021
  • 8February, 2018
  • 8June, 2019
  • 6November, 2018
  • 5November, 2020
  • 4December, 2018
  • 4January, 2019
  • 4September, 2017
  • 3February, 2021
  • 3October, 2017
  • 2November, 2019
Available data
  • 294bam
  • 159fastq
  • 68tagAlign
  • 20bigWig
Organism
  • 330Homo sapiens
Biosample type
  • 184tissue
  • 83cell line
  • 32in vitro differentiated cells
  • 32primary cell
Organ
  • 107liver
  • 51pancreas
  • 34connective tissue
  • 30epithelium
  • 28brain
  • 24adipose tissue
  • 22vasculature
  • 21blood vessel
  • 20heart
  • 17limb
  • 12kidney
  • 11nerve
  • 9artery
  • 8spleen
  • 6blood
  • 6bodily fluid
  • 6embryo
  • 6musculature of body
  • 2vein
  • 1eye
Project
  • 331AMP
Genome assembly (visualization)
  • 32hg19
  • GRCh38
Lab
  • 314AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
  • 5Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
Audit category:
  • 15inconsistent ontology term
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

331 results

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Clear Filters
ChIP-seq
MeRIP-seq
tissue
liver42
islet of Langerhans112
tibial nerve11
subcutaneous adipose tissue10
body of pancreas9
cell line
HepG260
GM128786
Panc16
EndoC_BH123
smooth muscle cell of the coronary artery2
in vitro differentiated cells
adipocyte7
neural progenitor cell7
embryonic stem cell6
pancreatic endoderm4
Hepatic endoderm2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
CD8-positive, alpha-beta T cell3
cardiac fibroblast2
endothelial cell of umbilical vein2
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