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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 213ChIP-seq
Assay category
  • 213DNA binding
Target of assay
  • 331control
  • 213histone
  • 213histone modification
  • 109broad histone mark
  • 104narrow histone mark
  • 66transcription factor
  • 14RNA binding protein
  • 5nucleotide modification
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 96August, 2017
  • 54May, 2021
  • 27October, 2019
  • 15November, 2017
  • 8May, 2020
  • 6October, 2017
  • 4August, 2021
  • 1April, 2019
  • 1December, 2017
  • 1May, 2019
Available data
  • 84tagAlign
  • 68bigWig
  • 64bed narrowPeak
  • 25bed broadPeak
  • 18bam
  • 4bigBed broadPeak
  • 4fastq
  • 1bigBed narrowPeak
Organism
  • 213Homo sapiens
Biosample type
  • 134tissue
  • 39primary cell
  • 34in vitro differentiated cells
  • 6cell line
Organ
  • 44connective tissue
  • 33liver
  • 31adipose tissue
  • 20musculature of body
  • 19brain
  • 15pancreas
  • 5blood vessel
  • 5epithelium
  • 5vasculature
  • 5vein
  • 4gonad
  • 4ovary
  • 2eye
  • 2limb
  • 1embryo
  • 1heart
  • 1lymph node
Project
  • 213AMP
Genome assembly (visualization)
  • GRCh38
  • 783hg19
Lab
  • 160AMP-T2D consortium
  • 50Kyle Gaulton, UCSD
  • 3Bing Ren, UCSD
Audit category:
  • 2missing controlled_by
Audit category:
  • 2inconsistent control read length
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

213 results

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Clear Filters
ChIP-seq
tissue
islet of Langerhans35
subcutaneous abdominal adipose tissue31
liver28
skeletal muscle tissue19
brain6
primary cell
CD8-positive, alpha-beta T cell30
endothelial cell of umbilical vein5
naive thymus-derived CD4-positive, alpha-beta T cell2
monocyte1
neutrophil1
in vitro differentiated cells
embryonic stem cell20
adipocyte12
neural progenitor cell1
pancreatic endoderm1
cell line
HepG25
Panc11
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