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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 104ChIP-seq
Assay category
  • 104DNA binding
Target of assay
  • 331control
  • 213histone
  • 213histone modification
  • 109broad histone mark
  • 104narrow histone mark
  • 66transcription factor
  • 14RNA binding protein
  • 5nucleotide modification
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 36August, 2017
  • 22May, 2021
  • 22October, 2019
  • 10November, 2017
  • 8May, 2020
  • 2August, 2021
  • 1April, 2019
  • 1December, 2017
  • 1May, 2019
  • 1October, 2017
Available data
  • 39tagAlign
  • 32bigWig
  • 31bed narrowPeak
  • 12bam
  • 10bed broadPeak
  • 2fastq
  • 1bigBed broadPeak
  • 1bigBed narrowPeak
Organism
  • 104Homo sapiens
Biosample type
  • 73tissue
  • 15in vitro differentiated cells
  • 13primary cell
  • 3cell line
Organ
  • 19liver
  • 16connective tissue
  • 11adipose tissue
  • 10brain
  • 8musculature of body
  • 6pancreas
  • 4gonad
  • 4ovary
  • 2eye
  • 2limb
  • 1blood vessel
  • 1embryo
  • 1epithelium
  • 1heart
  • 1lymph node
  • 1vasculature
  • 1vein
Project
  • 104AMP
Genome assembly (visualization)
  • 411hg19
  • GRCh38
Lab
  • 82AMP-T2D consortium
  • 20Kyle Gaulton, UCSD
  • 2Bing Ren, UCSD
Audit category:
  • 1missing controlled_by
Audit category:
  • 1inconsistent control read length
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

104 results

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Clear Filters
ChIP-seq
tissue
islet of Langerhans27
liver16
subcutaneous abdominal adipose tissue11
skeletal muscle tissue7
cingulate gyrus4
in vitro differentiated cells
embryonic stem cell10
adipocyte4
pancreatic endoderm1
primary cell
CD8-positive, alpha-beta T cell10
endothelial cell of umbilical vein1
monocyte1
naive thymus-derived CD4-positive, alpha-beta T cell1
cell line
HepG23
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