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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 66ChIP-seq
Assay category
  • 66DNA binding
Target of assay
  • 331control
  • 213histone
  • 213histone modification
  • 109broad histone mark
  • 104narrow histone mark
  • 66transcription factor
  • 14RNA binding protein
  • 5nucleotide modification
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 40November, 2017
  • 12May, 2021
  • 11August, 2021
  • 1April, 2019
  • 1August, 2017
  • 1November, 2018
Available data
  • 48bigWig
  • 44bed narrowPeak
  • 42bam
  • 42fastq
  • 33bigBed narrowPeak
  • 13bed broadPeak
  • 13bigBed broadPeak
  • 3tar
Organism
  • 66Homo sapiens
Biosample type
  • 52cell line
  • 12in vitro differentiated cells
  • 1primary cell
  • 1tissue
Organ
  • 52liver
  • 1kidney
Project
  • 66AMP
Genome assembly (visualization)
  • 487hg19
  • GRCh38
Lab
  • 43AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
Audit category:
  • 8missing controlled_by
Audit category:
  • 2inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

66 results

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ChIP-seq
cell line
HepG252
in vitro differentiated cells
embryonic stem cell12
primary cell
skeletal muscle myoblast1
tissue
kidney1
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