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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
25
ATAC-seq
25
total RNA-seq
2
Hi-C
Assay category
38
DNA binding
25
DNA accessibility
25
Transcription
2
3D chromatin structure
Target of assay
17
histone
17
histone modification
15
transcription factor
10
broad histone mark
7
RNA binding protein
7
narrow histone mark
6
chromatin remodeller
6
control
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
313
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
2
January, 2018
1
August, 2022
Available data
88
bam
57
bed narrowPeak
57
bigWig
30
fastq
25
tsv
21
bigBed narrowPeak
2
bedpe bed3+
2
hic
Organism
90
Homo sapiens
Biosample type
46
tissue
39
cell line
5
in vitro differentiated cells
Organ
55
pancreas
18
blood
18
bodily fluid
16
epithelium
7
spleen
5
liver
adipose tissue
1
connective tissue
Project
90
AMP
Genome assembly (visualization)
84
hg19
82
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
assembly!
hg18
assembly!!
hg18
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
90 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
islet of Langerhans
19
19
1
spleen
7
cell line
GM12878
18
EndoC_BH1
13
1
1
1
HepG2
5
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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