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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
total RNA-seq
85
single cell RNA-seq
49
ATAC-seq
48
snATAC-seq
47
WGBS
5
STARR-seq
4
ChIP-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
187
Transcription
97
DNA accessibility
47
DNA methylation
4
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
4
control
Date released
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
21
August, 2021
7
August, 2020
Available data
169
fastq
153
zippedFastqFolder
16
tsv
10
bigWig
1
bedpe bed3+
1
vcf
Organism
342
Homo sapiens
Biosample type
321
primary cell
19
cell line
2
tissue
Organ
151
pancreas
149
epithelium
16
liver
2
kidney
Project
321
HPAP
21
AMP
Genome assembly (visualization)
hg19
11
GRCh38
Lab
959
AMP-T2D consortium
321
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
105
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
21
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
audit script error
1
inconsistent ontology term
assembly!
hg18
hg19
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
342 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
STARR-seq
ChIP-seq
Hi-C
whole genome sequencing assay
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
pancreatic acinar cell
4
cell line
HepG2
9
2
4
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
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