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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
DNase-seq
20
ChIP-seq
Assay category
28
DNA accessibility
20
DNA binding
Target of assay
15
histone
15
histone modification
8
narrow histone mark
7
broad histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
24
June, 2019
13
August, 2017
6
November, 2017
4
October, 2019
1
November, 2020
Available data
611
bigWig
607
bam
407
fastq
293
bed narrowPeak
270
tsv
153
zippedFastqFolder
107
bigBed narrowPeak
99
tagAlign
48
bed broadPeak
48
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
48
Homo sapiens
Biosample type
176
tissue
59
cell line
48
primary cell
1
in vitro differentiated cells
Organ
22
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
6
connective tissue
4
vein
3
heart
2
liver
1
eye
1
musculature of body
Project
48
AMP
Genome assembly (visualization)
44
GRCh38
41
hg19
Lab
48
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
inconsistent assembly
assembly!
hg18
audit.WARNING.category!
inconsistent assembly
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
48 results
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DNase-seq
ChIP-seq
primary cell
skeletal muscle myoblast
1
12
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
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