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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
Assay category
39
DNA binding
Target of assay
105
histone
105
histone modification
53
narrow histone mark
51
broad histone mark
39
transcription factor
37
control
11
RNA binding protein
1
chromatin remodeller
Date released
16
August, 2017
16
May, 2021
7
December, 2017
Available data
27
bam
27
bigWig
23
fastq
22
bed narrowPeak
4
tagAlign
2
bed bed3+
2
bigBed narrowPeak
Organism
39
Homo sapiens
Biosample type
346
cell line
94
tissue
39
in vitro differentiated cells
10
primary cell
Organ
16
connective tissue
3
epithelium
2
embryo
2
liver
1
pancreas
Project
39
AMP
Genome assembly (visualization)
27
GRCh38
27
hg19
Lab
27
AMP-T2D consortium
12
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
inconsistent control read length
assembly!
hg18
audit.WARNING.category!
inconsistent control read length
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
in vitro differentiated cells
adipocyte
16
embryonic stem cell
12
cardiomyocytes
3
hepatocyte
2
pancreatic endoderm
2
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