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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
8
ATAC-seq
Assay category
98
DNA binding
8
DNA accessibility
Target of assay
38
transcription factor
36
histone
36
histone modification
24
control
20
broad histone mark
16
narrow histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
395
August, 2017
385
November, 2017
341
May, 2020
315
August, 2021
314
October, 2019
218
June, 2019
202
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
January, 2018
3
June, 2018
1
August, 2022
Available data
100
fastq
98
bam
75
bigWig
73
bed narrowPeak
56
bigBed narrowPeak
14
tagAlign
9
bed bed3+
4
bed broadPeak
Organism
106
Homo sapiens
Biosample type
71
tissue
34
in vitro differentiated cells
1
stem cell
Organ
63
liver
18
epithelium
16
brain
10
embryo
5
pancreas
1
adipose tissue
1
connective tissue
1
spleen
Project
106
AMP
Genome assembly (visualization)
80
GRCh38
79
hg19
Lab
105
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
inconsistent control read length
assembly!
hg18
audit.WARNING.category!
inconsistent control read length
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
106 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
liver
38
brain
15
right lobe of liver
10
body of pancreas
4
cerebellum (Hemisphere)
1
+ See 3 more…
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
7
Hepatic endoderm
3
Posterior foregut
3
definitive endodermal cell
3
+ See 1 more…
stem cell
hESC
1
See all biosamples
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