Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
total RNA-seq
141
single cell RNA-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
1
Hi-C
Assay category
287
Transcription
136
DNA accessibility
47
DNA methylation
3
DNA binding
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
7
March, 2020
October, 2022
1
March, 2023
Available data
169
fastq
153
zippedFastqFolder
60
bigWig
53
tsv
50
bam
3
bed narrowPeak
1
hic
Organism
478
Homo sapiens
Biosample type
375
primary cell
96
tissue
8
cell line
Organ
182
pancreas
152
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
Project
AMP
321
HPAP
91
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
61
GRCh38
50
hg19
Lab
321
Klaus Kaestner, Upenn
84
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
7
AMP-T2D consortium
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
7
inconsistent ontology term
assembly!
hg18
award.project!
AMP
lab.title!
Anna Gloyn, Oxford
month_released!
May, 2021
October, 2022
BIOSAMPLE
ASSAY
479 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
peripheral blood mononuclear cell
8
+ See 27 more…
tissue
kidney
47
islet of Langerhans
7
6
11
2
lung
9
10
pancreas
4
cell line
EndoC_BH1
2
3
1
2
See all biosamples
Download