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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
129
ATAC-seq
127
total RNA-seq
30
DNase-seq
17
pCHi-C
9
RRBS
8
single cell RNA-seq
8
snATAC-seq
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
185
DNA binding
168
DNA accessibility
137
Transcription
10
DNA methylation
6
3D chromatin structure
Target of assay
164
histone
164
histone modification
89
broad histone mark
75
narrow histone mark
19
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
55
June, 2019
34
October, 2019
31
July, 2019
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
1
August, 2017
March, 2020
1
March, 2023
Available data
609
bam
603
bigWig
295
bed narrowPeak
264
tsv
fastq
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
tar
Organism
523
Homo sapiens
Biosample type
2360
tissue
523
primary cell
245
in vitro differentiated cells
224
cell line
2
stem cell
Organ
84
epithelium
36
connective tissue
36
kidney
30
vasculature
27
blood vessel
21
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
5
pancreas
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
318
AMP
204
T1D
HPAP
1
ITG
Genome assembly (visualization)
398
hg19
307
GRCh38
Lab
283
AMP-T2D consortium
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
1
audit script error
assembly!
hg18
award.project!
HPAP
files.file_type!
fastq
month_released!
March, 2020
BIOSAMPLE
ASSAY
523 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
single cell RNA-seq
snATAC-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
CD8-positive, alpha-beta T cell
33
2
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
1
1
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