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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
single cell RNA-seq
41
ChIP-seq
28
total RNA-seq
19
ATAC-seq
Assay category
122
Transcription
41
DNA binding
19
DNA accessibility
Target of assay
35
histone
35
histone modification
18
narrow histone mark
17
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
73
September, 2018
August, 2017
48
July, 2018
38
April, 2018
9
November, 2017
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
557
bigWig
551
bam
264
tsv
262
bed narrowPeak
182
fastq
90
bigBed narrowPeak
88
tagAlign
37
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
182
Homo sapiens
Biosample type
427
cell line
202
tissue
182
primary cell
83
in vitro differentiated cells
3
stem cell
Organ
148
pancreas
140
epithelium
9
brain
6
vasculature
3
blood vessel
3
connective tissue
Project
182
AMP
HPAP
Genome assembly (visualization)
180
hg19
177
GRCh38
Lab
182
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
32
missing controlled_by
assembly!
hg18
award.project!
HPAP
month_released!
August, 2017
BIOSAMPLE
ASSAY
182 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
primary cell
pancreatic ductal cell
9
13
4
4
pancreatic beta cell
12
10
6
pancreatic alpha cell
12
10
5
pancreatic acinar cell
9
8
4
4
pancreatic delta cell
11
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