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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
snATAC-seq
11
ATAC-seq
7
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
Assay category
29
DNA accessibility
7
Transcription
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
May, 2021
23
February, 2023
16
January, 2021
5
March, 2020
Available data
50
bam
50
bigWig
tsv
3
bed narrowPeak
Organism
44
Homo sapiens
Biosample type
30
tissue
8
primary cell
6
cell line
Organ
31
pancreas
8
blood
8
bodily fluid
1
epithelium
Project
2666
AMP
318
HPAP
47
KPMP
44
T1D
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
3
GRCh38
3
hg19
Lab
39
Kyle Gaulton, UCSD
5
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg18
files.file_type!
tsv
vcf
month_released!
May, 2021
BIOSAMPLE
ASSAY
44 results
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snATAC-seq
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
tissue
islet of Langerhans
6
11
7
2
pancreas
4
primary cell
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
3
1
2
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