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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
138
ChIP-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
192
Transcription
138
DNA binding
7
DNA methylation
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
107
control
22
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
167
May, 2020
66
November, 2017
36
August, 2017
20
May, 2022
18
August, 2021
12
December, 2017
10
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
November, 2018
1
December, 2018
1
February, 2020
October, 2019
Available data
659
bam
602
bigWig
450
fastq
bed narrowPeak
344
bigBed narrowPeak
173
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
348
Homo sapiens
Biosample type
247
tissue
93
cell line
8
primary cell
in vitro differentiated cells
Organ
720
pancreas
555
connective tissue
476
adipose tissue
353
epithelium
348
liver
198
heart
157
kidney
151
bone element
90
vasculature
88
blood vessel
72
brain
62
artery
36
musculature of body
20
lung
15
blood
15
bodily fluid
11
spleen
9
limb
8
embryo
8
skeleton
7
eye
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
348
AMP
Genome assembly (visualization)
187
hg19
163
GRCh38
Lab
311
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assembly!
hg18
biosample_type!
in vitro differentiated cells
files.file_type!
bed narrowPeak
month_released!
October, 2019
BIOSAMPLE
ASSAY
348 results
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total RNA-seq
ChIP-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
166
63
3
1
1
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
14
71
1
2
2
2
1
primary cell
hepatocyte
5
1
1
endothelial cell of hepatic sinusoid
1
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