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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
ChIP-seq
89
total RNA-seq
5
RRBS
3
DNase-seq
3
WGBS
1
ATAC-seq
1
FAIRE-seq
Assay category
193
DNA binding
89
Transcription
8
DNA methylation
5
DNA accessibility
Target of assay
129
histone modification
128
histone
73
broad histone mark
54
narrow histone mark
33
transcription factor
31
control
6
RNA binding protein
2
chromatin remodeller
Date released
397
November, 2017
314
August, 2021
295
August, 2017
281
February, 2021
279
October, 2019
194
May, 2020
193
May, 2021
162
June, 2019
120
July, 2018
116
February, 2023
115
May, 2019
94
December, 2017
86
November, 2018
80
April, 2019
67
July, 2019
66
May, 2022
62
March, 2020
60
November, 2019
51
October, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
10
November, 2020
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
January, 2018
1
August, 2022
1
October, 2022
Available data
211
fastq
209
bigWig
207
bam
106
bed narrowPeak
89
tsv
65
tagAlign
29
bed bed3+
26
bed broadPeak
21
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bigBed broadPeak
Organism
288
Homo sapiens
Biosample type
227
tissue
68
in vitro differentiated cells
primary cell
Organ
147
pancreas
125
connective tissue
adipose tissue
54
liver
26
musculature of body
Project
295
AMP
Genome assembly (visualization)
214
hg19
191
GRCh38
Lab
295
AMP-T2D consortium
Audit category:
15
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
assembly!
hg18
biosample_type!
primary cell
month_released!
January, 2018
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
295 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
DNase-seq
WGBS
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
1
3
skeletal muscle tissue
22
4
pancreas
14
right lobe of liver
1
1
in vitro differentiated cells
adipocyte
67
1
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