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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
57
total RNA-seq
9
ATAC-seq
8
snATAC-seq
3
DNase-seq
1
RRBS
Assay category
71
DNA binding
57
Transcription
20
DNA accessibility
1
DNA methylation
Target of assay
56
transcription factor
11
RNA binding protein
10
chromatin remodeller
10
control
3
histone
3
histone modification
3
narrow histone mark
Date released
66
February, 2021
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
8
June, 2019
5
July, 2019
1
January, 2018
1
May, 2021
Available data
139
bam
122
bigWig
72
bed narrowPeak
60
bigBed narrowPeak
60
fastq
57
tsv
6
tagAlign
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
149
Homo sapiens
Biosample type
tissue
127
cell line
21
primary cell
1
in vitro differentiated cells
Organ
509
epithelium
441
pancreas
430
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
36
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
141
AMP
8
T1D
Genome assembly (visualization)
130
hg19
129
GRCh38
Lab
141
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
1
inconsistent control
assembly!
hg18
biosample_type!
tissue
files.file_type!
txt
BIOSAMPLE
ASSAY
149 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
RRBS
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
primary cell
cardiac fibroblast
5
3
1
peripheral blood mononuclear cell
8
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
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in vitro differentiated cells
cardiac fibroblast
1
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