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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
total RNA-seq
131
ChIP-seq
30
ATAC-seq
5
pCHi-C
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
134
Transcription
131
DNA binding
30
DNA accessibility
4
3D chromatin structure
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
1
August, 2018
Available data
237
bam
204
bigWig
131
tsv
87
bed narrowPeak
83
fastq
26
tagAlign
16
bigBed narrowPeak
14
bed bed3+
7
bedpe bed3+
4
bed bedgraph
4
hic
2
ibed
Organism
306
Homo sapiens
Biosample type
2300
tissue
910
primary cell
590
cell line
306
in vitro differentiated cells
9
stem cell
Organ
28
embryo
24
epithelium
16
connective tissue
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
306
AMP
Genome assembly (visualization)
236
hg19
216
GRCh38
hg18
Lab
255
AMP-T2D consortium
47
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
assembly!
hg18
month_released!
August, 2017
February, 2023
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
306 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
5
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
cardiac precursors (cardiac muscle cell)
19
1
1
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