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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
52
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
Hi-C
2
Capture-C
1
DNase-seq
Assay category
155
DNA binding
52
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
91
histone
91
histone modification
46
broad histone mark
44
narrow histone mark
33
transcription factor
31
control
6
RNA binding protein
3
chromatin remodeller
Date released
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
December, 2019
1
August, 2018
Available data
206
bam
166
bigWig
137
fastq
127
bed narrowPeak
50
tsv
34
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
256
Homo sapiens
Biosample type
2661
tissue
875
primary cell
575
cell line
256
in vitro differentiated cells
9
stem cell
Organ
96
connective tissue
26
embryo
19
epithelium
15
liver
1
adipose tissue
Project
256
AMP
Genome assembly (visualization)
208
hg19
181
GRCh38
hg18
Lab
249
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
45
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assembly!
hg18
month_released!
December, 2019
May, 2021
organ_slims!
artery
BIOSAMPLE
ASSAY
256 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
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