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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ChIP-seq
166
ATAC-seq
117
total RNA-seq
58
single cell RNA-seq
41
WGBS
29
snATAC-seq
24
DNase-seq
15
pCHi-C
9
Hi-C
8
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
220
DNA accessibility
176
Transcription
168
DNA binding
50
DNA methylation
9
3D chromatin structure
Target of assay
153
histone
153
histone modification
83
broad histone mark
70
narrow histone mark
15
control
3
RNA binding protein
3
transcription factor
Date released
205
May, 2021
147
May, 2020
134
May, 2022
38
June, 2019
34
October, 2019
23
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
5
December, 2019
May, 2019
4
April, 2018
4
August, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
577
bigWig
568
bam
fastq
274
bed narrowPeak
255
tsv
153
zippedFastqFolder
100
tagAlign
90
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
638
Homo sapiens
Biosample type
1781
tissue
638
primary cell
235
cell line
211
in vitro differentiated cells
5
stem cell
Organ
163
epithelium
88
pancreas
connective tissue
31
kidney
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
279
AMP
203
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
367
hg19
274
GRCh38
Lab
244
AMP-T2D consortium
238
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
31
inconsistent ontology term
4
audit script error
assembly!
hg18
files.file_type!
fastq
month_released!
May, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
638 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
33
2
4
1
pancreatic beta cell
13
16
1
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