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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
234
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
28
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
252
Transcription
234
DNA binding
113
DNA accessibility
Target of assay
199
histone
199
histone modification
101
narrow histone mark
98
broad histone mark
30
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
90
May, 2020
72
September, 2018
58
August, 2017
51
June, 2019
48
July, 2018
43
April, 2018
31
October, 2019
18
July, 2019
9
November, 2017
6
November, 2020
5
December, 2019
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
606
bigWig
600
bam
409
fastq
288
bed narrowPeak
270
tsv
153
zippedFastqFolder
102
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
600
Homo sapiens
Biosample type
1789
tissue
600
primary cell
582
cell line
291
in vitro differentiated cells
3
stem cell
Organ
237
epithelium
194
pancreas
36
connective tissue
32
vasculature
27
blood vessel
26
kidney
20
vein
17
brain
13
musculature of body
12
heart
12
liver
eye
2
adipose tissue
2
artery
1
pericardium
Project
420
AMP
180
T1D
Genome assembly (visualization)
567
hg19
518
GRCh38
Lab
420
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
42
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assembly!
hg18
month_released!
May, 2019
organ_slims!
eye
BIOSAMPLE
ASSAY
600 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic beta cell
13
10
12
7
pancreatic alpha cell
13
10
12
6
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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